PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g014260.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 248aa    MW: 27752.2 Da    PI: 7.5743
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g014260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-3254106356
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                         k +YkeClkNhA+ +GghavDGCgEf+p+ ge+g++++lkCaAC+CHRnFHR+ 
  Sopim04g014260.0.1  54 KPKYKECLKNHAVGIGGHAVDGCGEFLPA-GEDGSIDSLKCAACNCHRNFHRKI 106
                         679*************************9.999*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2156105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-2856105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-3056105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.50657106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.6E-29171246IPR009057Homeodomain-like
SuperFamilySSF466891.97E-18173245IPR009057Homeodomain-like
PROSITE profilePS500718.794182246IPR001356Homeobox domain
TIGRFAMsTIGR015651.0E-23184240IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEFEDQQKQR DEEIAATPRH NDSLDNSDLT TKMPPSPQLE LEPLTAVQLW TNNKPKYKEC  60
LKNHAVGIGG HAVDGCGEFL PAGEDGSIDS LKCAACNCHR NFHRKIAPPP IAAAAAGVGG  120
EPVPFVYHSH NQLPTYYRTL PPPCGYLQYH VAPNQRPLAL PSTSGGYRED QEDISHPNYS  180
GGSKKRFRTK FSQVQKDKMQ ELADKLGWRI QREDEELVQQ LCNETGITRQ VFKVWMHNNK  240
HTLGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-211842421775ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236700.10.0PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2594e-69ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH54e-69ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLK4BPT00.0K4BPT0_SOLLC; Uncharacterized protein
STRINGSolyc04g014260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-66homeobox protein 22